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Davis Lab

Publications

1. Davidson RK, Davis KM.  Yersinia pseudotuberculosis: cultivation, storage, and methods for introducing DNA. 2020. Curr Protoc Microbiol, 59(1):e122. PMID: 33079471

2. Raneses JR, Ellison AL, Liu, B, Davis KM. Subpopulations of stressed Y. pseudotuberculosis preferentially survive doxycycline treatment within host tissues. 2020. mBio, 11(4):e00901-20.PMID: 32753491 **also submitted as bioRxiv pre-print, doi: https://doi.org/10.1101/2020.04.13.039222

3. Clark SA, Thibault D, Shull LM, Davis KM, Aunins E, van Opijnen T, Isberg RR. Topologically correct synthetic reconstruction of pathogen social behavior found during Yersinia growth in deep tissue sites. 2020. eLife, 9:e58106. PMID: 32543373
**also submitted as bioRxiv pre-print, https://doi.org/10.1101/2020.04.27.065144

4. Davis KM. For the greater (bacterial) good: heterogeneous expression of energetically costly virulence factors. Review. 2020. Infect Immun, 88(7):e00911-19. PMID: 32041785

5. Davis KM, Krupp J, Clark S, Isberg RR. Iron-sulfur cluster repair contributes to Yersinia pseudotuberculosis survival within deep tissues. 2019. Infect Immun, 87(10):e00533-19. PMID: 31331956

6. Davis KM, Isberg RR. One for all, but not all for one: social behavior during bacterial diseases. Review. 2019. Trends Microbiol, 27(1):64-74. PMID: 30243514

7. Davis KM. All Yersinia are not created equal: phenotypic adaptation to distinct niches within mammalian tissues. Review. 2018. Front Cell Infect Microbiol, 8:261. PMID 30128305

8. Davis KM, Isberg RR. Defining heterogeneity within bacterial populations via single cell approaches. Review. 2016. Bioessays, 38(8):782-90. PMID: 27273675
ncbi.nlm.nih.gov/pubmed/27273675

9. Chen Y, Lin Y, Davis KM, Wang Q, Rnjak-Kovacina J, Li C, Isberg RR, Kumamoto CA, Mecsas J, Kaplan DL. Robust bioengineered 3D functional human intestinal epithelium. 2015. Sci Rep, 5: 1370 PMID: 26374193 ncbi.nlm.nih.gov/pubmed/26374193

10. Asrat S#, Davis KM#, Isberg RR. Modulation of the host innate immune and inflammatory response by translocated bacterial proteins. Review. 2015. Cell Microbiol, 17(6): 785-95. (# equal contribution) PMID: 25850689 ncbi.nlm.nih.gov/pubmed/25850689

11. Davis KM, Mohammadi S, Isberg RR. Community behavior and spatial regulation within a bacterial microcolony in deep tissue sites serves to protect again host attack. 2015. Cell Host Microbe, 17(1): 21-31. PMID: 25500192 ncbi.nlm.nih.gov/pubmed/25500192

12. Davis KM, Isberg RR. Plague’s partners in crime. Preview. 2014. Immunity, 41(3): 347-349. PMID: 25238090 ncbi.nlm.nih.gov/pubmed/25238090

13. Davis KM, Nakamura S, Weiser JN. Nod2-sensing of lysozyme-digested peptidoglycan promotes macrophage recruitment and clearance of S. pneumoniae colonization in mice. 2011. J Clin Invest, 121(9): 3666-3676. PMID: 21841315 ncbi.nlm.nih.gov/pubmed/21841315

14. Nakamura S, Davis KM, Weiser JN. Synergistic stimulation of type I interferons during influenza virus coinfection promotes Streptococcus pneumoniae colonization in mice. 2011. J Clin Invest, 121(9): 3657-3665. PMID: 21841308 ncbi.nlm.nih.gov/pubmed/21841308

15. Davis KM, Weiser JN. Modifications to the peptidoglycan backbone help bacteria to establish infection. Review. 2011. Infect Immun, 79(2): 562-570. PMID: 21041496
ncbi.nlm.nih.gov/pubmed/21041496

16. Clarke TB, Davis KM, Lysenko ES, Zhou AY, Yu Y, Weiser JN. Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity. 2010. Nat Med, 16(2): 228-231. PMID: 20081863 ncbi.nlm.nih.gov/pubmed/20081863

17. Davis KM, Akinbi HT, Standish AJ, Weiser JN. Resistance to mucosal lysozyme compensates for the fitness deficit of peptidoglycan modifications by Streptococcus pneumoniae. 2008. PLoS Pathog,4(12): e1000241. PMID: 19079576 ncbi.nlm.nih.gov/pubmed/19079576

18. Dunlap PV, Davis KM, Tomiyama S, Fujino M, Fukui A. Developmental and microbiological analysis of the inception of bioluminescent symbiosis in the marine fish Nuchequula nuchalis (Perciformes: Leiognathidae). 2008. Appl Environ Microbiol, 74(24): 7471-7481. PMID: 18978090
ncbi.nlm.nih.gov/pubmed/18978090

19. Ji G, Zheng J, Shen Y, Wu X, Jiang R, Lin Y, Loke JC, Davis KM, Reese GJ, Li QQ. Predictive modeling of plant messenger RNA polyadenylation sites. 2007. BMC Bioinformatics, 8(1): 43. PMID: 17286857
ncbi.nlm.nih.gov/pubmed/17286857